If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ), 'gf_id' => 'HOM05D001024', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001024' ), 'data_identifier' => 'HOM05D001024', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D001024', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '592', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17730' => 'bna', 'A03p13710' => 'bna', 'A03p21430' => 'bna', 'A03p56760' => 'bna', 'A05p07470' => 'bna', 'A05p40160' => 'bna', 'A06p06340' => 'bna', 'A08p34420' => 'bna', 'A10p13360' => 'bna', 'Aa31LG1G5310' => 'aar', 'Aa31LG2G11210' => 'aar', 'Aa31LG3G12050' => 'aar', 'Aa31LG5G11360' => 'aar', 'Aa31LG5G11830' => 'aar', 'Aa31LG5G18680' => 'aar', 'Aa31LG5G23350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1610' => 'aag', 'Actinidia00171' => 'ach', 'Actinidia00825' => 'ach', 'Actinidia00826' => 'ach', 'Actinidia03669' => 'ach', 'Actinidia10590' => 'ach', 'Actinidia11636' => 'ach', 'Actinidia20807' => 'ach', 'Actinidia23151' => 'ach', 'Actinidia29011' => 'ach', 'Actinidia38990' => 'ach', 'Ah.10g024710' => 'amhyb', 'Ah.10g024760' => 'amhyb', 'AL1G20210' => 'aly', 'AL3G19610' => 'aly', 'AL4G35880' => 'aly', 'AL8G31770' => 'aly', 'Aqoxy4G02283' => 'aox', 'Aqoxy4G03309' => 'aox', 'Aqoxy6G00113' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V9TKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VDT9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PZQD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8PRWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0WHJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1K407' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L78SMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LAQ4UI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M54HFV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4VKB6' => 'arhy', 'AT1G09660' => 'ath', 'AT2G38610' => 'ath', 'AT3G08620' => 'ath', 'AT4G26480' => 'ath', 'AT5G56140' => 'ath', 'ATR0751G254' => 'atr', 'ATR1127G226' => 'atr', 'ATR1136G112' => 'atr', 'Atru.chr2.3784' => 'acertr', 'Atru.chr6.545' => 'acertr', 'Atru.chr8.64' => 'acertr', 'AUR62006450' => 'cqu', 'AUR62029803' => 'cqu', 'AUR62035633' => 'cqu', 'BcaB01g03672' => 'bca', 'BcaB01g04380' => 'bca', 'BcaB01g04381' => 'bca', 'BcaB02g09186' => 'bca', 'BcaB03g13312' => 'bca', 'BcaB08g35979' => 'bca', 'BcaC01g05526' => 'bca', 'BcaC01g06403' => 'bca', 'BcaC02g12011' => 'bca', 'BcaC04g20122' => 'bca', 'BcaC05g29599' => 'bca', 'BcaC06g32741' => 'bca', 'BcaC06g32743' => 'bca', 'BcaC07g36840' => 'bca', 'BcaC09g50713' => 'bca', 'BcaNung02415' => 'bca', 'BolC1t02171H' => 'bol', 'BolC3t14035H' => 'bol', 'BolC3t14928H' => 'bol', 'BolC4t22484H' => 'bol', 'BolC5t29522H' => 'bol', 'BolC5t29524H' => 'bol', 'BolC5t29525H' => 'bol', 'BolC5t34573H' => 'bol', 'BolC7t45984H' => 'bol', 'BolC8t47008H' => 'bol', 'BolC8t48939H' => 'bol', 'BolC9t57586H' => 'bol', 'BraA01t01728Z' => 'bra', 'BraA03t10674Z' => 'bra', 'BraA03t11379Z' => 'bra', 'BraA03t14744Z' => 'bra', 'BraA05t19712Z' => 'bra', 'BraA06t23845Z' => 'bra', 'BraA08t35354Z' => 'bra', 'BraA10t43437Z' => 'bra', 'C01p22400' => 'bna', 'C03p05870' => 'bna', 'C03p16080' => 'bna', 'C03p25340' => 'bna', 'C04p08940' => 'bna', 'C05p07710' => 'bna', 'C05p07740' => 'bna', 'C05p59240' => 'bna', 'C07p55300' => 'bna', 'C08p02120' => 'bna', 'C08p13110' => 'bna', 'C09p47290' => 'bna', 'CAN.G110.3' => 'can', 'CAN.G623.66' => 'can', 'CAN.G659.19' => 'can', 'CAN.G855.16' => 'can', 'CAN.G874.63' => 'can', 'CANSAT11G2148' => 'cansat', 'CANSAT54G2126' => 'cansat', 'CANSAT54G2988' => 'cansat', 'CARHR009630' => 'chi', 'CARHR082920' => 'chi', 'CARHR133280' => 'chi', 'CARHR234060' => 'chi', 'CARHR269510' => 'chi', 'Carub.0001s0901' => 'cru', 'Carub.0003s0775' => 'cru', 'Carub.0004s2059' => 'cru', 'Carub.0007s1442' => 'cru', 'Carub.0008s1646' => 'cru', 'Ca_05729_v3' => 'car', 'Ca_07793_v3' => 'car', 'Ca_14144_v3' => 'car', 'Ca_15082_v3' => 'car', 'Ca_23108_v3' => 'car', 'CBR_g29600' => 'cbr', 'CBR_g66778' => 'cbr', 'Cc01_g15480' => 'ccan', 'Cc02_g23330' => 'ccan', 'Cc05_g15610' => 'ccan', 'Cc06_g00210' => 'ccan', 'CDE02G2439' => 'cde', 'CDE03G0146' => 'cde', 'CDE04G2730' => 'cde', 'CDE04G3414' => 'cde', 'CDE06G1072' => 'cde', 'CDE06G1268' => 'cde', 'CDE06G1998' => 'cde', 'CDE06G2175' => 'cde', 'CDE07G2058' => 'cde', 'Cfa004475' => 'cfa', 'Cfa011854' => 'cfa', 'Cfa016952' => 'cfa', 'Cfa017001' => 'cfa', 'Ciclev10002036m.g' => 'ccl', 'Ciclev10003000m.g' => 'ccl', 'Ciclev10009077m.g' => 'ccl', 'Ciclev10012376m.g' => 'ccl', 'CiPaw.05G003700' => 'cil', 'CiPaw.06G175100' => 'cil', 'CiPaw.09G223300' => 'cil', 'CiPaw.10G166600' => 'cil', 'CiPaw.11G209800' => 'cil', 'CiPaw.13G060600' => 'cil', 'CiPaw.14G048900' => 'cil', 'ClCG04G006180' => 'cla', 'ClCG09G021710' => 'cla', 'ClCG10G007160' => 'cla', 'ClCG10G022830' => 'cla', 'COL.COLO4_05678' => 'col', 'COL.COLO4_07780' => 'col', 'COL.COLO4_17709' => 'col', 'Cpa.g.sc0.73' => 'cpa', 'Cpa.g.sc113.28' => 'cpa', 'Cpa.g.sc12.77' => 'cpa', 'Cpa.g.sc2.266' => 'cpa', 'CsaV3_3G006500' => 'csa', 'CsaV3_3G032980' => 'csa', 'CsaV3_4G027380' => 'csa', 'CsaV3_7G021340' => 'csa', 'CSS0002398' => 'camsi', 'CSS0004049' => 'camsi', 'CSS0008918' => 'camsi', 'CSS0014063' => 'camsi', 'CSS0014126' => 'camsi', 'CSS0020298' => 'camsi', 'CSS0021001' => 'camsi', 'CSS0023094' => 'camsi', 'CSS0024549' => 'camsi', 'CSS0026870' => 'camsi', 'CSS0044297' => 'camsi', 'CSS0044660' => 'camsi', 'CSS0045817' => 'camsi', 'DCAR_001702' => 'dca', 'DCAR_013763' => 'dca', 'DCAR_018584' => 'dca', 'DCAR_023963' => 'dca', 'Dinv12292' => 'din', 'Dinv16942' => 'din', 'Dinv19650' => 'din', 'Dinv25368' => 'din', 'Dinv28753' => 'din', 'Dinv29605' => 'din', 'Dinv40903' => 'din', 'Duzib052G0786' => 'dzi', 'Duzib132G1262' => 'dzi', 'Duzib151G0449' => 'dzi', 'Duzib170G0626' => 'dzi', 'Duzib213G0186' => 'dzi', 'Duzib248G0159' => 'dzi', 'Duzib268G0873' => 'dzi', 'Duzib268G1154' => 'dzi', 'ECA236G0840' => 'eca', 'ECA236G0958' => 'eca', 'ECA236G5098' => 'eca', 'ECA240G1618' => 'eca', 'ECA247G3070' => 'eca', 'ECA247G3373' => 'eca', 'ECA248G0960' => 'eca', 'EL10Ac4g07498' => 'bvu', 'EL10Ac7g17139' => 'bvu', 'Eucgr.A00807' => 'egr', 'Eucgr.F03650' => 'egr', 'Eucgr.I02779' => 'egr', 'FAN02G4531' => 'fan', 'FAN05G0920' => 'fan', 'FAN08G0779' => 'fan', 'FAN09G4089' => 'fan', 'FAN11G0509' => 'fan', 'FAN11G1760' => 'fan', 'FAN14G5572' => 'fan', 'FAN16G0097' => 'fan', 'FAN16G1858' => 'fan', 'FAN18G3723' => 'fan', 'FAN21G1167' => 'fan', 'FAN21G2848' => 'fan', 'FAN25G3596' => 'fan', 'FvH4_3g41080' => 'fve', 'FvH4_3g41740' => 'fve', 'FvH4_5g28270' => 'fve', 'FvH4_6g09430' => 'fve', 'Glyma.02G237800' => 'gma', 'Glyma.03G001400' => 'gma', 'Glyma.04G111900' => 'gma', 'Glyma.06G322300' => 'gma', 'Glyma.09G271700' => 'gma', 'Glyma.11G200400' => 'gma', 'Glyma.12G165700' => 'gma', 'Glyma.14G206800' => 'gma', 'Glyma.15G228700' => 'gma', 'Glyma.16G002200' => 'gma', 'Glyma.16G221200' => 'gma', 'Glyma.18G050300' => 'gma', 'Glyma.18G217500' => 'gma', 'Gohir.A02G001500' => 'ghi', 'Gohir.A04G001600' => 'ghi', 'Gohir.A04G133800' => 'ghi', 'Gohir.A05G328300' => 'ghi', 'Gohir.A10G152300' => 'ghi', 'Gohir.A11G276300' => 'ghi', 'Gohir.A12G044700' => 'ghi', 'Gohir.D02G001800' => 'ghi', 'Gohir.D04G176900' => 'ghi', 'Gohir.D05G329300' => 'ghi', 'Gohir.D05G387800' => 'ghi', 'Gohir.D10G113900' => 'ghi', 'Gohir.D11G286700' => 'ghi', 'Gohir.D12G043700' => 'ghi', 'Gorai.001G130400' => 'gra', 'Gorai.003G112500' => 'gra', 'Gorai.003G117200' => 'gra', 'Gorai.005G002300' => 'gra', 'Gorai.007G310100' => 'gra', 'Gorai.008G046100' => 'gra', 'Gorai.009G352600' => 'gra', 'Gorai.009G454400' => 'gra', 'Gorai.011G125700' => 'gra', 'Gorai.012G169800' => 'gra', 'GSVIVG01014762001' => 'vvi', 'GSVIVG01023231001' => 'vvi', 'GSVIVG01024534001' => 'vvi', 'GSVIVG01026752001' => 'vvi', 'GSVIVG01029865001' => 'vvi', 'HanXRQChr01g0013601' => 'han', 'HanXRQChr03g0067981' => 'han', 'HanXRQChr06g0179611' => 'han', 'HanXRQChr06g0182441' => 'han', 'HanXRQChr08g0230871' => 'han', 'HanXRQChr10g0286151' => 'han', 'HanXRQChr10g0286171' => 'han', 'HanXRQChr10g0292901' => 'han', 'HanXRQChr11g0334511' => 'han', 'HanXRQChr16g0516281' => 'han', 'HanXRQChr17g0558501' => 'han', 'Haze_09908' => 'cav', 'Haze_10032' => 'cav', 'Haze_21205' => 'cav', 'Haze_24488' => 'cav', 'Hma1.2p1_0142F.1_g064040' => 'hma', 'Hma1.2p1_0193F.1_g084250' => 'hma', 'Hma1.2p1_0321F.1_g124250' => 'hma', 'Hma1.2p1_0633F.1_g192750' => 'hma', 'HPP92_003717' => 'vpl', 'HPP92_003720' => 'vpl', 'HPP92_015747' => 'vpl', 'HPP92_015781' => 'vpl', 'HPP92_017864' => 'vpl', 'HPP92_017910' => 'vpl', 'HPP92_019046' => 'vpl', 'Hund03686' => 'sun', 'Hund19737' => 'sun', 'Hund22975' => 'sun', 'Lalb_Chr01g0023951' => 'lal', 'Lalb_Chr10g0103961' => 'lal', 'Lalb_Chr15g0079991' => 'lal', 'Lalb_Chr15g0085661' => 'lal', 'Lalb_Chr18g0061081' => 'lal', 'Lalb_Chr19g0123901' => 'lal', 'Lalb_Chr20g0117311' => 'lal', 'Lj1A112T59' => 'lonja', 'Lj1A899G25' => 'lonja', 'Lj1g0006891' => 'lja', 'Lj2C56G12' => 'lonja', 'Lj3A939G96' => 'lonja', 'Lj3g0016658' => 'lja', 'Lj3g0027266' => 'lja', 'Lj5C270G5' => 'lonja', 'Lj6g0007010' => 'lja', 'Lj6g0016870' => 'lja', 'LjContig00141g0019589' => 'lja', 'Lsat_1_v5_gn_2_106941' => 'lsa', 'Lsat_1_v5_gn_5_177200' => 'lsa', 'Lsat_1_v5_gn_5_30301' => 'lsa', 'Lsat_1_v5_gn_5_49441' => 'lsa', 'Lsat_1_v5_gn_7_116201' => 'lsa', 'Lsat_1_v5_gn_8_109621' => 'lsa', 'Lsat_1_v5_gn_9_119641' => 'lsa', 'Lsat_1_v5_gn_9_13320' => 'lsa', 'Lsat_1_v5_gn_9_39781' => 'lsa', 'Manes.01G006000' => 'mes', 'Manes.05G205400' => 'mes', 'Manes.07G025800' => 'mes', 'Manes.08G168100' => 'mes', 'Manes.09G121700' => 'mes', 'Manes.10G116300' => 'mes', 'Manes.18G125000' => 'mes', 'Mapoly0114s0034' => 'mpo', 'MBI03_g02708_MAGBIO' => 'mbi', 'MBI14_g43559_MAGBIO' => 'mbi', 'MBI15_g06345_MAGBIO' => 'mbi', 'MBI15_g06346_MAGBIO' => 'mbi', 'MD03G1041200' => 'mdo', 'MD03G1041400' => 'mdo', 'MD03G1047700' => 'mdo', 'MD04G1177800' => 'mdo', 'MD08G1243900' => 'mdo', 'MD11G1042300' => 'mdo', 'MD11G1050300' => 'mdo', 'MD11G1050700' => 'mdo', 'MD11G1051000' => 'mdo', 'MD12G1193400' => 'mdo', 'MD15G1438100' => 'mdo', 'Medtr2g005590' => 'mtr', 'Medtr3g010220' => 'mtr', 'Medtr3g062640' => 'mtr', 'Medtr5g075710' => 'mtr', 'Medtr7g074100' => 'mtr', 'Medtr8g005430' => 'mtr', 'Medtr8g005550' => 'mtr', 'Medtr8g006580' => 'mtr', 'Medtr8g006605' => 'mtr', 'MELO3C001405.2' => 'cme', 'MELO3C013221.2' => 'cme', 'MELO3C016490.2' => 'cme', 'MELO3C025257.2' => 'cme', 'MELO3C031041.2' => 'cme', 'Migut.D00803' => 'egut', 'Migut.J00012' => 'egut', 'Migut.M01589' => 'egut', 'Migut.N00849' => 'egut', 'MSTRG.10199' => 'ama', 'MSTRG.12719' => 'ama', 'MSTRG.15826' => 'ama', 'MSTRG.18928' => 'ama', 'MSTRG.27869' => 'ama', 'MSTRG.7035' => 'ama', 'Nitab4.5_0000105g0400' => 'nta', 'Nitab4.5_0000152g0120' => 'nta', 'Nitab4.5_0000311g0090' => 'nta', 'Nitab4.5_0000787g0050' => 'nta', 'Nitab4.5_0001203g0040' => 'nta', 'Nitab4.5_0001215g0080' => 'nta', 'Nitab4.5_0001303g0020' => 'nta', 'Nitab4.5_0002902g0090' => 'nta', 'Nitab4.5_0005169g0050' => 'nta', 'Nitab4.5_0007040g0010' => 'nta', 'Nitab4.5_0007589g0010' => 'nta', 'Nitab4.5_0008987g0010' => 'nta', 'Nitab4.5_0010141g0010' => 'nta', 'Nn1g07404' => 'nnu', 'Nn1g07653' => 'nnu', 'Nn1g07656' => 'nnu', 'Nn1g08290' => 'nnu', 'Nn1g08323' => 'nnu', 'Nn2g10222' => 'nnu', 'Nn5g26788' => 'nnu', 'Oeu007822.1' => 'oeu', 'Oeu010211.1' => 'oeu', 'Oeu011399.1' => 'oeu', 'Oeu023890.2' => 'oeu', 'Oeu026930.1' => 'oeu', 'Oeu028464.1' => 'oeu', 'Oeu035180.1' => 'oeu', 'Oeu038696.1' => 'oeu', 'Oeu043624.1' => 'oeu', 'Os01g0818300' => 'osa', 'Os01g0886300' => 'osa', 'Os02g0722700' => 'osa', 'Os03g0815700' => 'osa', 'Os05g0419500' => 'osa', 'Os05g0481500' => 'osa', 'Os07g0227400' => 'osa', 'Peaxi162Scf00011g01534' => 'pax', 'Peaxi162Scf00232g00525' => 'pax', 'Peaxi162Scf00374g00318' => 'pax', 'Peaxi162Scf00390g00216' => 'pax', 'Peaxi162Scf00455g00910' => 'pax', 'Peaxi162Scf00732g00145' => 'pax', 'PGR004G2616' => 'pgr', 'PGR031G3185' => 'pgr', 'PGR083G1809' => 'pgr', 'PGR142G3155' => 'pgr', 'PGSC0003DMG400022254' => 'stu', 'PGSC0003DMG400024911' => 'stu', 'PGSC0003DMG400027702' => 'stu', 'PGSC0003DMG400030478' => 'stu', 'Phvul.005G003500' => 'pvu', 'Phvul.006G080900' => 'pvu', 'Phvul.006G219900' => 'pvu', 'Phvul.008G079200' => 'pvu', 'Phvul.008G244000' => 'pvu', 'Phvul.010G059400' => 'pvu', 'Potri.001G471000' => 'ptr', 'Potri.003G005500' => 'ptr', 'Potri.004G225900' => 'ptr', 'Potri.006G111400' => 'ptr', 'Potri.011G168000' => 'ptr', 'Potri.013G159800' => 'ptr', 'Potri.016G140800' => 'ptr', 'Potri.019G132100' => 'ptr', 'Pp3c14_26290' => 'ppa', 'Pp3c17_23570' => 'ppa', 'Pp3c2_300' => 'ppa', 'Prupe.1G581200' => 'ppe', 'Prupe.6G033400' => 'ppe', 'Prupe.6G038700' => 'ppe', 'Prupe.6G297700' => 'ppe', 'Psat0s3954g0040' => 'psa', 'Psat1g222960' => 'psa', 'Psat2g049040' => 'psa', 'Psat2g191040' => 'psa', 'Psat3g117080' => 'psa', 'PSO017G1250' => 'pso', 'PSO170G5533' => 'pso', 'PSO339G6322' => 'pso', 'PSO384G4041' => 'pso', 'PSO541G0198' => 'pso', 'PSO675G4135' => 'pso', 'QL01p023773' => 'qlo', 'QL02p005599' => 'qlo', 'QL02p100947' => 'qlo', 'QL07p031312' => 'qlo', 'QL07p031590' => 'qlo', 'QL08p000721' => 'qlo', 'RcHm_v2.0_Chr3g0459891' => 'rch', 'RcHm_v2.0_Chr5g0073811' => 'rch', 'RcHm_v2.0_Chr5g0074821' => 'rch', 'RcHm_v2.0_Chr7g0220511' => 'rch', 'Rhsim04G0008400' => 'rsi', 'Rhsim04G0120500' => 'rsi', 'Rhsim05G0233300' => 'rsi', 'Rhsim06G0234600' => 'rsi', 'Rhsim13G0057400' => 'rsi', 'Sabra01G0171600' => 'sbr', 'Sabra03G0002700' => 'sbr', 'Sabra04G0157300' => 'sbr', 'Sabra06G0086700' => 'sbr', 'Sabra11G0138500' => 'sbr', 'Sabra13G0127900' => 'sbr', 'Sabra16G0319600' => 'sbr', 'Sabra19G0128700' => 'sbr', 'SalBow4G2793' => 'sbo', 'SalBow4G3123' => 'sbo', 'SalBow8G3311' => 'sbo', 'Sc03g0011740' => 'sci', 'Sc20g0007230' => 'sci', 'Sed0007391' => 'sed', 'Sed0010727' => 'sed', 'Sed0011274' => 'sed', 'Sed0017707' => 'sed', 'Sed0018939' => 'sed', 'SEGI_19110' => 'sgi', 'SEGI_33826' => 'sgi', 'SEGI_34355' => 'sgi', 'SEGI_36030' => 'sgi', 'SEGI_37335' => 'sgi', 'SEGI_40937' => 'sgi', 'SGA_v2.0_scaffold11G05951' => 'sas', 'SGA_v2.0_scaffold373G50195' => 'sas', 'SGA_v2.0_scaffold42G15904' => 'sas', 'SGA_v2.0_scaffold7G03540' => 'sas', 'SGA_v2.0_scaffold92G28179' => 'sas', 'SMO144G0082' => 'smo', 'SMO169G0070' => 'smo', 'Solyc01g103410.3' => 'sly', 'Solyc06g082710.4' => 'sly', 'Solyc07g066070.3' => 'sly', 'Solyc09g031930.3' => 'sly', 'Solyc10g074870.2' => 'sly', 'Sopen01g045760' => 'spe', 'Sopen06g034080' => 'spe', 'Sopen07g034250' => 'spe', 'Sopen09g025960' => 'spe', 'Sopen10g027360' => 'spe', 'Sp1g08270' => 'spa', 'Sp3g07070' => 'spa', 'Sp4g20940' => 'spa', 'Sp6g17990' => 'spa', 'Sp7g24420' => 'spa', 'TAR369G1039' => 'tar', 'TAR381G0574' => 'tar', 'TAR623G0437' => 'tar', 'TAR624G0133' => 'tar', 'TAR626G1538' => 'tar', 'TAR633G0243' => 'tar', 'TAR636G2207' => 'tar', 'THA.LOC104806654' => 'tha', 'THA.LOC104813259' => 'tha', 'THA.LOC104817721' => 'tha', 'THA.LOC104823334' => 'tha', 'THA.LOC104823346' => 'tha', 'THA.LOC104827075' => 'tha', 'Thecc.02G016700' => 'tca', 'Thecc.04G147900' => 'tca', 'Thecc.07G002800' => 'tca', 'Thhalv10008323m.g' => 'esa', 'Thhalv10014150m.g' => 'esa', 'Thhalv10017040m.g' => 'esa', 'Thhalv10021281m.g' => 'esa', 'Thhalv10025796m.g' => 'esa', 'TPR.G13809' => 'tpr', 'TPR.G18539' => 'tpr', 'TPR.G18868' => 'tpr', 'TPR.G2139' => 'tpr', 'TPR.G24296' => 'tpr', 'TPR.G30732' => 'tpr', 'TPR.G5046' => 'tpr', 'TPR.G7202' => 'tpr', 'TPR.G7551' => 'tpr', 'TWI38G0321' => 'twi', 'TWI38G0729' => 'twi', 'TWI39G0657' => 'twi', 'TWI53G1454' => 'twi', 'TWI74G1606' => 'twi', 'TWI77G0134' => 'twi', 'unitig_0.g214' => 'ugi', 'unitig_0.g2150' => 'ugi', 'unitig_27.g24895' => 'ugi', 'unitig_747.g21439' => 'ugi', 'unitig_899.g15267' => 'ugi', 'vmacro02861' => 'vma', 'vmacro08956' => 'vma', 'vmacro09601' => 'vma', 'vmacro09804' => 'vma', 'vmacro11636' => 'vma', 'vmacro18584' => 'vma', 'vmacro19857' => 'vma', 'vmacro20394' => 'vma', 'VMungo0331G0429' => 'vmu', 'VMungo0540G0408' => 'vmu', 'VMungo0540G1735' => 'vmu', 'VMungo0647G0860' => 'vmu', 'VMungo1080G1901' => 'vmu', 'VMungo1383G2653' => 'vmu', 'Zm00001eb062190' => 'zma', 'Zm00001eb095100' => 'zma', 'Zm00001eb145440' => 'zma', 'Zm00001eb149690' => 'zma', 'Zm00001eb189130' => 'zma', 'Zm00001eb212060' => 'zma', 'Zm00001eb253130' => 'zma', 'Zm00001eb290910' => 'zma', 'Zm00001eb303680' => 'zma', 'Zm00001eb352100' => 'zma', 'Zm00001eb368980' => 'zma', 'Zm00001eb440690' => 'zma' ) $gf_id = 'HOM05D001024' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001024' ) $data_identifier = 'HOM05D001024' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 3, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 3, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb440690' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1